home.md

 # RTIS Dev Documentation - Table of Content
+
 - [RTIS Dev Classes](#rtis-dev-classes)
   - [RTISMeasurement](#rtismeasurement)
   - [RTISSettings](#rtissettings)
@@ -29,7 +30,9 @@
   - [reset_device](#reset_device)
   - [set_log_mode](#set_log_mode)
   - [set_custom_logger](#set_custom_logger)
+ 
 # **RTIS Dev Classes**
+
 ## **RTISMeasurement**
 
 <p class="func-header">
@@ -110,6 +113,42 @@ Class describing all the processing and recording settings related to RTIS devic
 Too many variables to describe here. Check the source-code for more information on which variables are available.
 Can be converted to a dictionary.
 
+<table class="docutils field-list field-table" frame="void" rules="none">
+    <col class="field-name" />
+    <col class="field-body" />
+    <tbody valign="top">
+        
+</table>
+
+
+
+#### Methods
+
+
+
+<p class="func-header">
+    <i></i> <b>set_recording_settings</b>(<i>self, adcSignal, dacSignal, microphoneSampleFrequency, dacSampleFrequency, microphoneSamples, callDuration, callMinimumFrequency, callMaximumFrequency, callEmissions</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L195">[source]</a>
+</p>
+
+
+
+<table class="docutils field-list field-table" frame="void" rules="none">
+    <col class="field-name" />
+    <col class="field-body" />
+    <tbody valign="top">
+        
+</table>
+
+
+
+
+
+<p class="func-header">
+    <i></i> <b>set_processing_settings</b>(<i>self, workers, pdmEnable, matchedFilterEnable, beamformingEnable, enveloppeEnable, cleanEnable, preloadToggle, delayMatrix, directions, ranges, microphoneLayout</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L214">[source]</a>
+</p>
+
+
+
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
     <col class="field-body" />
@@ -125,11 +164,11 @@ Can be converted to a dictionary.
 
 The class based on a Thread to start RTIS sonar measurements triggered by an external trigger.
 To set the data queue correctly use `set_queue(dataQueue)` function.
-the [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) objects will then be put on this queue.
+the [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) objects will then be put on this queue.
 To start the thread use the `start()` function. To stop use the `stop_thread()` function.
 By default using a `signal.SIGINT` exit (ex. using <kbd>CTRL</kbd>+<kbd>C</kbd>) will gracefully end the script.
 
-Use [`create_measure_external_trigger_queue(dataQueue)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#create_measure_external_trigger_queue) to make an easy to use the class.
+Use [`create_measure_external_trigger_queue(dataQueue)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#create_measure_external_trigger_queue) to make an easy to use the class.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -161,7 +200,7 @@ measure_thread.join()
     <i></i> <b>set_queue</b>(<i>self, dataQueue</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L358">[source]</a>
 </p>
 
-Set the dataQueue to be used by the Thread to store the incoming [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) objects on.
+Set the dataQueue to be used by the Thread to store the incoming [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) objects on.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -238,11 +277,11 @@ Main thread function to run continuously. Should not be used. Use `start()` inst
 
 The class based on a Thread to start RTIS sonar measurements triggered by an external trigger.
 To set the callback function correctly use `set_callback(callback)` function.
-Your callback function should only have one argument, the [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) data package.
+Your callback function should only have one argument, the [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) data package.
 To start the thread use the `start()` function. To stop use the `stop_thread()` function.
 By default using a `signal.SIGINT` exit (ex. using <kbd>CTRL</kbd>+<kbd>C</kbd>) will gracefully end the script.
 
-Use [`create_measure_external_trigger_callback(save_callback)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#create_measure_external_trigger_callback) to make an easy to use the class.
+Use [`create_measure_external_trigger_callback(save_callback)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#create_measure_external_trigger_callback) to make an easy to use the class.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -290,7 +329,7 @@ measure_thread.join()
     <th class="field-name"><b>Parameters:</b></td>
     <td class="field-body" width="100%"><b>callback : <i>method with one argument (RTISMeasurement)</i></b>
 <p class="attr">
-    This is the method that will be used as a callback when a new measurement is triggered by the external trigger. This function should only require one argument, the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement"><code>RTISMeasurement</code></a> object containing the measurement data.
+    This is the method that will be used as a callback when a new measurement is triggered by the external trigger. This function should only require one argument, the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement"><code>RTISMeasurement</code></a> object containing the measurement data.
 </p></td>
 </tr>
     </tbody>
@@ -350,6 +389,7 @@ Main thread function to run continuously. Should not be used. Use `start()` inst
 
 
 # **RTIS Dev Methods**
+
 ## **open_connection**
 
 <p class="func-header">
@@ -474,7 +514,7 @@ Please read their decription carefully.
 #### Examples
 
 Create settings from a premade setup.
-You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_premade_processing_settings_list).
+You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_premade_processing_settings_list).
 
 ```python
 rtisdev.set_recording_settings(premade="short_20_80")
@@ -623,7 +663,7 @@ Please read their decription carefully.
 #### Examples
 
 Create settings from a premade setup with all processing steps on.
-You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_premade_processing_settings_list).
+You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_premade_processing_settings_list).
 
 ```python
 rtisdev.set_processing_settings(premade="3D_5m_3000", pdmEnable=True, matchedFilterEnable=True,
@@ -637,7 +677,7 @@ rtisdev.set_processing_settings(premade="3D_5m_3000")
 ```
 
 Create settings from a premade setup with only part of the processing steps enabled and no preloading.
-You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_premade_processing_settings_list).
+You can get the available premade settings with [`get_premade_recording_settings_list()`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_premade_processing_settings_list).
 
 ```python
 rtisdev.set_processing_settings(premade="2D_5m_181", pdmEnable=True, matchedFilterEnable=True,
@@ -703,7 +743,7 @@ rtisdev.set_processing_settings(customPath="mysettingsfolder")
     <i>def</i> <b>get_current_settings</b>(<i></i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L1958">[source]</a>
 </p>
 
-The function returns the [`RTISSettings`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtissettings) object of the current DSP Settings.
+The function returns the [`RTISSettings`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtissettings) object of the current DSP Settings.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -727,7 +767,7 @@ The function returns the [`RTISSettings`](https://cosysgit.uantwerpen.be/rtis-so
     <i>def</i> <b>set_settings_from_class</b>(<i>settings</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L1975">[source]</a>
 </p>
 
-The high level function to set the wanted DSP settings from an [`RTISSettings`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtissettings) object. These can be created
+The high level function to set the wanted DSP settings from an [`RTISSettings`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtissettings) object. These can be created
 with the get_custom_settings() or get_settings() functions.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
@@ -856,7 +896,7 @@ The high level function to stop the CUDA workers. Only required if actually usin
     <i>def</i> <b>get_raw_measurement</b>(<i>behaviour=False</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L2076">[source]</a>
 </p>
 
-The high level function to start an RTIS sonar measurement and return the raw data in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) object.
+The high level function to start an RTIS sonar measurement and return the raw data in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) object.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -896,7 +936,7 @@ measurement = rtisdev.get_raw_measurement(True)
 </p>
 
 The high level function to start an RTIS sonar measurement and process it with only PDM filtering
-and subsampling to get the (microphone) signals return them in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) object.
+and subsampling to get the (microphone) signals return them in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) object.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -937,7 +977,7 @@ signal_measurement = rtisdev.get_signal_measurement(True)
 </p>
 
 The high level function to start an RTIS sonar measurement and process it and return the raw and processed data
-in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) object.
+in an [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) object.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -977,8 +1017,8 @@ processed_measurement = rtisdev.get_processed_measurement(True)
     <i>def</i> <b>process_measurement</b>(<i>measurement</i>) <a class="src-href" target="_blank" href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/blob/master/rtisdev/RTISDev2.py#L2196">[source]</a>
 </p>
 
-The high level function to process a raw RTIS sonar measurement from a [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) object
-and return the raw and processed data in a new [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement) object.
+The high level function to process a raw RTIS sonar measurement from a [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) object
+and return the raw and processed data in a new [`RTISMeasurement`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement) object.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
     <col class="field-name" />
@@ -1052,8 +1092,8 @@ High level function to set the internal measurement counter of the sonar hardwar
 </p>
 
 Set the behaviour of the sonar hardware to passive or active. This is only necessary if using external
-measurement triggers. As using the normal RTIS Dev functions of [`get_raw_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_raw_measurement),
-[`get_signal_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_signal_measurement) and [`get_processed_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev#get_processed_measurement) will use the given function
+measurement triggers. As using the normal RTIS Dev functions of [`get_raw_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_raw_measurement),
+[`get_signal_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_signal_measurement) and [`get_processed_measurement(behaviour)`](https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#get_processed_measurement) will use the given function
 argument to define the sonar behaviour.
 
 <table class="docutils field-list field-table" frame="void" rules="none">
@@ -1120,7 +1160,7 @@ the RTIS Device and afterwards put this measurement on a data queue.
     <th class="field-name"><b>Parameters:</b></td>
     <td class="field-body" width="100%"><b>dataQueue : <i>multiprocessing.Manager.Queue</i></b>
 <p class="attr">
-    On this queue the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement"><code>RTISMeasurement</code></a> objects will be put after an external trigger starts a new measurement.
+    On this queue the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement"><code>RTISMeasurement</code></a> objects will be put after an external trigger starts a new measurement.
 </p></td>
 </tr>
 <tr class="field">
@@ -1165,7 +1205,7 @@ the RTIS Device and afterwards put this measurement on a data queue.
     <th class="field-name"><b>Parameters:</b></td>
     <td class="field-body" width="100%"><b>callback : <i>method with one argument of type RTISMeasurement</i></b>
 <p class="attr">
-    This is the method that will be used as a callback when a new measurement is triggered by the external trigger. This function should only require one argument, the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev#rtismeasurement"><code>RTISMeasurement</code></a> object containing the measurement data.
+    This is the method that will be used as a callback when a new measurement is triggered by the external trigger. This function should only require one argument, the <a href="https://cosysgit.uantwerpen.be/rtis-software/rtisdev/-/wikis/home#rtismeasurement"><code>RTISMeasurement</code></a> object containing the measurement data.
 </p></td>
 </tr>
 <tr class="field">